I am following the instructions for building QuPath from source on CentOS 7. I get the following error:
[[email protected] qupath]$ ./gradlew clean jpackage
FAILURE: Build failed with an exception.
* What went wrong:
Failed to apply plugin class 'org.gradle.api.plugins.JavaPlugin'.
> java.io.FileNotFoundException: /scratch3/downloads/gradle-7.4.2/lib/plugins/gradle-plugins-7.4.2.jar (No such file or directory)
* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to get full insights.
* Get more help at https://help.gradle.org
BUILD FAILED in 721ms
The instructions that I am following are as follows:
$ git clone https://github.com/qupath/qupath
$ cd qupath
$ ./gradlew clean jpackage
I have:
$ uname -a
Linux goku.bu.edu 3.10.0-1160.59.1.el7.x86_64 #1 SMP Wed Feb 23 16:47:03 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
and
$ lsb_release -a
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.9.2009 (Core)
Release: 7.9.2009
Codename: Core
also:
$ java -version
openjdk version "1.8.0_322"
OpenJDK Runtime Environment (build 1.8.0_322-b06)
OpenJDK 64-Bit Server VM (build 25.322-b06, mixed mode)
I also don’t understand why it is looking elsewhere than where I have zipped it and set the directory to it as in:
[[email protected] downloads]$ sudo vi /etc/profile.d/gradle.sh
[[email protected] downloads]$ sudo chmod +x /etc/profile.d/gradle.sh
[[email protected] downloads]$ source /etc/profile.d/gradle.sh
[[email protected] downloads]$ gradle -v
------------------------------------------------------------
Gradle 7.4.2
------------------------------------------------------------
Build time: 2022-03-31 15:25:29 UTC
Revision: 540473b8118064efcc264694cbcaa4b677f61041
Kotlin: 1.5.31
Groovy: 3.0.9
Ant: Apache Ant(TM) version 1.10.11 compiled on July 10 2021
JVM: 1.8.0_322 (Red Hat, Inc. 25.322-b06)
OS: Linux 3.10.0-1160.59.1.el7.x86_64 amd64
[[email protected] downloads]$ cat /etc/profile.d/gradle.sh
export GRADLE_HOME=/opt/gradle/gradle-7.4.2
export PATH=${GRADLE_HOME}/bin:${PATH}
$ tail -1 ~/.bashrc
export PATH=$PATH:/opt/gradle/gradle-7.4.2/bin
$ source ~/.bashrc
The plugin that is reported as missing in the error is in
[[email protected] ~]$ find /opt/gradle -name "gradle-plugins-7.4.2.jar"
/opt/gradle/gradle-7.4.2/lib/plugins/gradle-plugins-7.4.2.jar
Full log of ./gradlew clean jpackage --stacktrace: https://pastebin.com/raw/RuuJnuTe
Full log of ./gradlew clean jpackage --debug:
https://pastebin.com/raw/EPJs2jRR
Full log of ./gradlew clean jpackage --scan:
https://pastebin.com/raw/TUGSM73K